EXAMPLE 3: Parallel coordinate visualization of the generations at which most frequent edges appearing in the structures learned by an EDA. The vertical axis represent the generation at which edges (shown in the horizontal axis) has been learned. A line between two points means that both edges appear in the same structure learned at the same generation.
0001 % EXAMPLE 3: 0002 % Parallel coordinate visualization of the generations at which most 0003 % frequent edges appearing in the structures learned by an EDA. The 0004 % vertical axis represent the generation at which edges (shown in the 0005 % horizontal axis) has been learned. A line between two points means that 0006 % both edges appear in the same structure learned at the same generation. 0007 0008 viewparams{1} = [14]; 0009 viewparams{2} = []; % The edges will be found by the algorithm 0010 viewparams{3} = 20; % Only those edges that appear at least 20 times will be shown 0011 viewparams{4} = 2; % Only substructures that have at least two edges are visualized in the PC 0012 viewparams{5} = 'ClusterUsingCorr'; % Variables will be ordered according correlation 0013 viewparams{6} = 'correlation'; %The distance used to cluster edges is 1-correlation between variables. (see help pdist). 0014 0015 [run_s,results] = ViewStructuresFromFile('ProteinStructsExR.txt', 20, 'viewmatrix_method','ViewPCStruct',viewparams) 0016