EXAMPLE 4: Dendrogram visualization of the hierarchical clustering of edges is shown Then, the ordering of variables found by the clustering is used to show the parallel coordinates representation of the edges learned at each generation.
0001 0002 % EXAMPLE 4: 0003 % Dendrogram visualization of the hierarchical clustering of edges is shown 0004 % Then, the ordering of variables found by the clustering is used to show 0005 % the parallel coordinates representation of the edges learned at each 0006 % generation. 0007 0008 viewparams{1} = [14]; 0009 viewparams{2} = []; % The edges will be found by the algorithm 0010 viewparams{3} = 30; % Only those edges that appear at least 30 times will be shown 0011 viewparams{4} = 3; % Only substructures that have at least two edges are visualized in the PC 0012 viewparams{5} = 'correlation'; % The distance used to cluster edges is 1-correlation between variables. (see help pdist). 0013 [run_s,results] = ViewStructuresFromFile('ProteinStructsExNR.txt',50, 'viewmatrix_method','ViewDenDroStruct',viewparams); 0014 0015 viewparams{2} = results{3}; % The ordering of edges found by hierarchical clustering will be used to show parallel coordinates 0016 viewparams{5} = 'none'; 0017 viewparams{6} = ''; 0018 [run_s,results] = ViewStructuresFromFile('ProteinStructsExNR.txt',50, 'viewmatrix_method','ViewPCStruct',viewparams); 0019 0020 0021 viewparams{1} = 14; 0022 viewparams{2} = [3 4 ; 4 5 ; 3 5 ; 6 7 ; 7 8; 8 9]; % The edges are listed 0023 viewparams{3} = [1:10]; % The first 10 runs 0024 viewparams{4} = [2,4,6,8,10]; % Generations 2,4,6,8,10 0025 [run_s,results] = ViewStructuresFromFile('ProteinStructsExNR.txt',50, 'viewmatrix_method','ViewGlyphStruct',viewparams);