< Master index Index for Mateda2.0/functions/protein >

Index for Mateda2.0/functions/protein

Matlab files in this directory:

 CallBackTracking
 CheckConstraint[Overlappings,Pos] = CheckConstraint(Pos,pos,vector)
 CreateFibbInitConfTranslates the vector to the positions in the grid
 EvalChain[Collisions,Overlappings,Pos] = EvalChain(vector)
 EvalChainFunctionalGiven a chain of molecules, calculates the numer of Collisions with
 EvaluateEnergyEvaluateEnergy: Evaluates the energy corresponding to the sequence lattice configuration determined by the lattice in vector.
 EvaluateEnergyFunctional[energy] = EvaluateEnergyFunctional(vector)
 EvaluateOffHPProtein[Evals] = EvaluateOffHPProtein(Pop)
 HP_newrepairingHP_newrepairing: An auxiliary function that modifies a sequence configuration to avoid self-intersections
 HP_repairing[NewPop] = HP_repairing(Pop,Card,repairing_params)
 MakePajekGraphOfProtein[Pos] = MakePajekGraphOfProtein(vector)
 NewFeasibleNewFeasible evaluates if a given move is feasible.
 OffFindPosOffFindPos translates the vector of angles to the positions into the lattice.
 OffPrintProtein[] = OffPrintProtein(vector)
 PrintProtein[Pos] = PrintProtein(vector)
 PutMoveAtPosPutMoveAtPos: updates the lattice given a mov

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