Dr. Jose Antonio Fernandes Salvador (2011) PhD with honours in Probabilistic Methods for Data Mining and Artificial Intelligence (University of Basque Country) (2003) MSc in Computer Systems Security with honours in Linux Security and Cryptography (University of Glamorgan) (2002) Computer Engineer (Universidad de Deusto). (2000) Technical Engineering in Computer Managements (Universidad de Deusto). (1996) High School in Management and Finances with honours (Instituto Politécnico Jesus Obrero) : SPAIN: +34 656 73 10 25 ja.fernandes.sp AT gmail DOT com Currently, Senior scientist in Big Data for Marine Research and Innovation at AZTI-Tecnalia Marine Science and Food research fundation (AZTI; Pasaia, Spain). Dr. Fernandes is a data scientist from computing and artificial intelligence studies with the skills and experience needed to translate the data into valuable information for marine research. These skills are curiosity, biological and oceanographic expertise, economic knowledge, ability to find information, understanding of statistics and machine learning and multidisciplinary communicative skills. Latest work and future line of research is about mitigation of impacts and long-term sustainability of fisheries using the above skills. This line of research contributes to address the Spanish Science and Technology Strategy challenges number 2 (bioeconomy), 5 (climate change) and 7 (digital society). It also aligns with SDG 14 challenge (ocean sustainability).

Work experience

• (2017-currently) Senior scientist in Big Data for Marine Research and Innovation. AZTI-Tecnalia Marine Science and Food research foundation.
• (2017-currently) PML visiting fellow. Plymouth Marine Laboratory.
• (2013-2017) Bio-economic Modeller. Plymouth Marine Laboratory.
• (2011-2013) Senior Research Associate. University of East Anglia. School of Environmental Sciences.
• (2012) Research consultant. Finnish Environment Institute (SYKE).
• (2011) Researcher. University of Helsinki. Faculty of Biological and Environmental Sciences. FEM group.
• (2007-2010) Researcher. AZTI-Tecnalia Marine Science and Food research foundation. PhD.
• (2004-2006) Computer Engineer. Gizerbitek IT Consultancy.
• (2000-2004) Systems administrator, web programming and users training. EDEX foundation.
• (1999-2000) Server administration, web design and programming. Grant from University of Deusto for Online Catalog of Journals (aurkinet.deusto.es)
• (1998-1999) Server administration, web design and programming. Grant from University of Deusto for E-learning system and contends development (elkano.deusto.es)
• (1996) Freelance programmer. Bike design program based on morphologic features. Madesa factory.

Thesis

• PhD: Data analysis advances in marine science for fisheries management: Supervised classification applications [dissertation pdf] [presentation pdf]
• MSc: An intrusion detection system based in the gathering of Linux Syslog Logs from Linux, Windows NT and Snort [dissertation pdf]

Publications in refereed JCR-Journals

• (2020) Changing fish distributions challenge the effective management of European fisheries. Baudron, A. R., Brunel, T., Blanchet, M.-A., Hidalgo, M., Chust, G., Brown, E. J., Kleisner, K. M., Millar, C., MacKenzie, B. R., Nikolioudakis, N., Fernandes, J.A., Fernandes, P. G. Ecograph, doi: 10.1111/ecog.04864. Q1.
• (2019) Global ensemble projections reveal trophic amplification of ocean biomass declines with climate change. Lotze, H. K., Tittensor, D. P., Bryndum-Buchholz, A., Eddy, T. D., Cheung, W. W., Galbraith, E. D.,..., Fernandes, J.A., ... & Bopp, L. PNAS, 116(26): 12907-12912. Q1.
• (2019) Beach litter forecasting on the south-eastern coast of the Bay of Biscay: A bayesian networks approach Granado, I., Basurko, O. C., Rubio, A., Ferrer, L., Hernández-González, J., Epelde, I., Fernandes, J. A. Continental Shelf Research, 180:14-23. DOI: 10.1016/j.csr.2019.04.016. [Journal link] Q1.
• (2019) Aggregated outputs by linear models: An application on marine litter beaching prediction. Hernández-González, J.; Inza, I., Granado, I., Basurko, O. C, Fernandes, J. A., Lozano, J.A. Information Sciences, 481, 381-393. DOI: 10.1016/j.ins.2018.12.083. [Journal link] Q1.
• (2019) Biology and fisheries of Hilsa shad in Bay of Bengal. Hossain, M. A., Das, I., Genevier, L., Hazra, S., Rahman, M., Barange, M., Fernandes, J. A.. Science of the Total Environment, 640-641: 1566-1577. Fernandes, J. A.. Science of the Total Environment, 651: 1720-1734. [Journal link] Q1.
• (2018) Importance of fisheries for food security across three climate change vulnerable deltas. . Lauria, V., Das, I., Hazra, S., Cazcarro, I., Arto, I., Kay, S., Ofori-Danson, P., Ahmed, M., Hossain, M. A. R., Barange, M., Fernandes, J. A.. Science of the Total Environment, 640-641: 1566-1577. Fernandes, J. A.. Science of the Total Environment, 637-638: 954-970. [Journal link] Q1.
• (2018) Conflict analysis and reallocation opportunities in the framework of marine spatial planning: A novel, spatially explicit Bayesian belief network approach for artisanal fishing and aquaculture. Coccoli, C., Galparsoro, I., Murillas, A., Pinarbasi, K., Fernandes, J. A.. Marine Policy, 94: 119-131. [Journal link] Q1.
• (2018) Impacts and responses to environmental change in coastal livelihoods of south-west Bangladesh. Hossain, M.A.R., Ahmed, M., Ojea, E., Fernandes, J. A.. Science of the Total Environment, 637-638: 954-970. [Journal link] Q1.
• (2018) Applying the Global RCP-SSP-SPA Scenario Framework at Sub-National Scale: A Multi-Scale and Participatory Scenario Approach. Kebede, et al., Fernandes, J. A., et al. Science of the Total Environment, 635: 659-672. Doi: 10.1016/j.scitotenv.2018.03.368. [Journal link] Q1.
• (2018) Climate change alters fish community size-structure, requiring adaptive policy targets. Queirós, A. ., Fernandes, J. A., Genevier, L., Lynan, C. P. Fish and Fisheries. DOI: 10.1111/faf.12278. [Journal link] Q1.
• (2017) A protocol for the intercomparison of marine fishery and ecosystem models: Fish-MIP v1.0. Tittensor, D. P., Eddy, T. D., Lotze, H. K., Galbraith, E. D., Cheung, W., Barange, M., Blanchard, J. L., Bopp, L., Bryndum-Buchholz, A., Büchner, M., Bulman, C., Carozza, D. A., Christensen, V., Coll, M., Dunne, J. P., Fernandes, J. A., Fulton, E. A., Hobday, A. J., Huber, V., Jennings, S., Jones, M., Lehodey, P., Link, J. S., Mackinson, S., Maury, O., Niiranen, S., Oliveros-Ramos, R., Roy, T., Schewe, J., Shin, Y.-J., Stock, C. A., Underwood, P. J., Volkholz, J., Watson, J. R., and Walker, N. D. Geoscientific Model Development. DOI: 10.5194/gmd-2017-209. Q1.
• (2017) Integrated Ecological-Socioeconomic Fisheries Models - Evaluation, Review and Challenges for Implementation. Nielsen, J.R., Thunberg, E., Holland D., Schmidt J.O., Fulton E.A., Bastardie F.1, Punt A.E.5, Allen I., Bartelings, H., Bertignac, M., Bethke E., Bossier, S, Buckworth, R., Carpenter, G., Christensen, A., Christensen, V., Da-Rocha, J.M., Deng, R., Dichmont, C.M., Doering, R., Esteban A., Fernandes, J.A, Frost, H., Garcia, D., Gasche, L., Gascuel, D., Gourguet, S., Groeneveld, R.A., Guillen, J., Guyader, O., Hamon, K., Hoff, A., Horbowy, J, Hutton, T, Lehuta, S., Little, L.R., Lleonart, J., Macher, C., Mackinson, S., Mahevas, S., Marchal, P., Mato-Amboage, R., Mapstone, B., Maynou, F., Merzéréaud, M., Palacz, A, Pascoe, S., Paulrud, A., Plaganyi-Lloyd, E., Prellezo, R., Putten, van E.I., Quaas, M., Ravn-Jonsen, L., Sanchez, S., Simons, S, Thébaud, O., Tomczak, M., Ulrich, C., Van Dijk, D., Vermard, Y, Voss, R., Waldo, S. Fish and Fisheries. DOI: 10.1111/faf.12232. Q1.
• (2017) Fertilization and connectivity in the Garrucha Canyon (SE-Spain) Implications for Marine Spatial Planning.Muñoz M., Reul A., Vargas-Yáñez M., Plaza F., Bautista B., García-Martínez M.C., Moya F., Gómez-Moreno M.L., Fernandes J.A., Rodríguez V. Marine Environmental Research, 126: 45-68. Q1.
• (2017) Detecting the presence-absence of bluefin tuna by automated analysis of long-range sonars on fishing vessels. Uranga J., Arrizabalaga H., Boyra G., Hernandez M., Urkullu A., Goñi N., Arregi I., Yurramendi Y., Fernandes J.A., Santiago J. PLOS ONE. DOI: 10.1371/journal.pone.0171382. Q1.
• (2017) The cost of reducing the North Atlantic Ocean biological carbon pump. Barange M., Butenschön M., Yool A., Beaumont N., Fernandes J.A., Martin A.P., Allen J.I. Frontiers in Marine Science. DOI: 10.3389/fmars.2016.00290. Q1.
• (2017) Estimating the ecological, economic and social impacts of ocean acidification and warming on UK fisheries. Fernandes J.A., Papathanasopoulou E., Queirós A.M., Cheung W.W.W.L., Yool A., Artioli Y., Pope E.C., Flynn K.J., Merino G., Calosi P., Beaumont N., Austen M., Widdicombe S., Hattam C., Barange M. Fish and Fisheries, 18(3): 389-411. [Journal link] [ResearchGate] Q1.
• (2016) Solutions for ecosystem-level protection of ocean systems under climate change. Queirós A.M., Huebert, K.B., Keyl, F., Fernandes J.A., Stolte, W., Maar, M., Kay, S., Jones, M.C., Teal, L.R., Hamon, K.G., Hendriksen, G., Vermard, Y., Marchal, P., Somerfield, P.J., Austen, M.C., Barange, M., Sell, A.F., Allen, J.I., Peck, M.A. Global Change Biology, 22(12): 3927-3936. [Journal link] [ResearchGate] Q1.
• (2016) Projecting Changes in the Distribution and Productivity of Living Marine Resources: A Critical Review of the Suite of Modeling Approaches used in the Large European Project VECTORS. Peck M.A., Arvanitidis C., Butenschön M., Canu D.M., Chatzinikolaou E., Cucco A., Domenici P., Fernandes J.A., Gasche L., Huebert K. B., Hufnagl M., Jones M.C., Kempf A., Keyl F., Maar M., Mahévas S., Marchal P., Nicolas D., Pinnegar J.K., Rivot E., Rochette S., Sell A.F., Sinerchia M., Solidoro C., Somerfield P.J., Teal L.R., Travers-Trolet M., van de Wolfshaar K.E. Estuarine, Coastal and Shelf Science. Doi:10.1016/j.ecss.2016.05.019. [Journal link] [ResearchGate] Q1.
• (2016) Semi-automated classification method addressing Marine Strategy Framework Directive (MSFD) zooplankton indicators. Uusitalo L., Fernandes J.A., Bachiller E., Tasala S., Lehtiniemi M. Ecological Indicators 71: 398-405. [Journal link] [ResearchGate] Q1.
• (2016) Economic impacts of marine ecological change: Review and recent contributions of the VECTORS project on European marine waters. Groeneveld R.A., Bartelings H., Börger T., Bosello F., Buisman E., Delpiazzo E., Eboli F., Fernandes J.A., Hamon K.G., Hattam C., Loureiro M., Nunes P.A., Piwowarczyk J., Schasfoort F.E., Simons S.L., Walker A.N. Estuarine, Coastal and Shelf Science. Doi: 10.1016/j.ecolind.2016.05.036 [Journal link] [ResearchGate] Q1.
• (2016) Costs and benefits to European shipping of ballast-water and hull-fouling treatment: impacts of native and non-indigenous species. Fernandes J.A., Santos L., Vance T., Fileman T., Smith D., Bishop J., Viard F., Queirós A.M., Merino G., Buisman E., Austen M. Marine Policy, 64: 148-155. [Journal link] [ResearchGate] Q1.
• (2016) Projecting marine fish production and catch potential in Bangladesh in the 21st century under long-term environmental change and management scenarios. Fernandes J.A., Kay S., Hossain M.A.R., Ahmed M., Cheung W.W.L., Lazar A.N., Barange M. ICES Journal of Marine Science, 73(5): 1357-1369. [Journal link] [ResearchGate] Q1.
• (2016) Uncertainties in projecting climate change impacts in marine ecosystems. Payne M.R., Barange M., Cheung W.W.L, Mackenzie B.R., Batchelder H.P., Cormon X., Eddy T.D., Fernandes J.A., Hollowed A., Jones M.C., Link J.S., Neubauer P., Ortiz I., Queiros A.M., Paula J.R. ICES Journal of Marine Science, 73(5): 1272-1282. [Journal link] [ResearchGate] Q1.
• (2016) Quantitative pathways for Northeast Atlantic fisheries based on climate, ecological-economic and governance modelling scenarios. Mullon C., Steinmetz F., Merino G., Fernandes J.A., Cheung W.W.L., Buttenschon M., Barange B. Ecol. Model. 320: 273-291. [Journal link] [ResearchGate] Q2.
• (2015) Spatio-Temporal Bayesian Network Models with Latent Variables for Revealing Trophic Dynamics and Functional Networks in Fisheries Ecology. Trifonova N., Kenny A., Maxwell D., Duplisea D., Fernandes J.A., Tucker A. Ecol. Inf. 30: 142-158. [Journal link] [ResearchGate] Q1.
• (2015) Evaluating machine-learning techniques for recruitment forecasting of seven North East Atlantic fish species. Fernandes J.A., Irigoien X, Lozano J.A., Inza I., Goikoetxea N., Pérez A. Ecol. Inform. 25, 35-42. [Java code] [Journal link] [ResearchGate] Q1.
• (2015) Improving the performance of a Mediterranean demersal fishery towards societal objectives beyond MSY. Merino G., Quetglas A., Maynou F., Arrizabalaga H., Murua H., Prellezo R., Santiago J., García D., Hidalgo J.M., Lleonart J., Tserpes G., Maravelias C., Carvalho N., Barange M., Austen M., Fernandes J.A., Grau A.M., Garau T. Fish. Res. 161: 134-144. Q1.
• (2015) Scaling up experimental ocean acidification and warming research: from individuals to the ecosystem. Queirós A., Fernandes J.A., Faulwetter S., Nunes J., Rastrick S.P.S., Mieszkowska N., Artioli Y., Yool A., Calosi P., Arvanitidis C., Findlay H.S., Barange M., Cheung W.W.L., Widdicombe S. Global Change Biol. 21(1):130-143 [Journal link] [ResearchGate] Q1.
• (2014) Estimating the economic loss of North Atlantic fisheries. Merino G., Barange M., Fernandes J.A., Mullon C., Cheung W.W.L., Trenkel V., Lam V. Prog. Oceanogr. 129, 314-323. [Journal link] [ResearchGate] Q1.
• (2013) Modelling the effects of climate change on the distribution and production of marine fishes: accounting for trophic interactions in a dynamic bioclimate envelope model. Fernandes J.A., Cheung W.W.L., Jennings S., Butenschön M., de Mora L., Frölicher T.L., Barange M., Grant A. Global Change Biol. 19(8): 2596-2607. [Journal link] [ResearchGate] Q1.
• (2013) Predicting the Impact of Climate Change on Threatened Species in UK Waters. Jones M.C., Dye S.R., Fernandes J.A., Frölicher T.L., Pinnegar J.K., Warren R., Cheung W.W.L. PLoS ONE 8(1): e54216. [Journal link] [ResearchGate] Q1.
• (2013) Supervised pre-processing approaches in multiple class-variables classification for fish recruitment forecasting. Fernandes J.A., Lozano J.A., Inza I., Irigoien X., Rodríguez J.D., Pérez A. Environ. Modell. Softw. 40, 245-254. [Java code] [Journal link] [ResearchGate] Q1.
• (2012) Evaluation of reaching the targets of the Water Framework Directive in the Gulf of Finland. Fernandes J.A., Kauppila P., Uusitalo L., Fleming V., Kuikka S., Pitkänen H. Environ. Sci. Technol. 46(15): 8220–8228. [Journal link] [ResearchGate] Q1.
• (2012) Improving semi-automated zooplankton classification using an internal control and different imaging devices. Bachiller E., Fernandes J.A., Irigoien X. Limnol. Oceanogr.: Methods 10: 1-9. [Journal link] [ResearchGate] Q1.
• (2011) Factors determining the distribution and betadiversity of mesozooplankton species in shelf and coastal waters of the Bay of Biscay. Irigoien X., Chust G., Fernandes J.A. Albaina A., Zarauz L. J. Plankton Res. 33(8): 1163-1181. [Journal link] [ResearchGate] Q1.
• (2011) The potential use of a Gadget model to predict stock responses to climate change in combination with Bayesian Networks: the case of the Bay of Biscay anchovy. Andonegi E., Fernandes J.A., Quincoces I., Uriarte A., Pérez A., Howell D., Stefansson G. ICES J. Mar. Sci. 68(6): 1257-1269. [Java implementation of NaiveBayesForRegression] [Journal link] [ResearchGate] Q1.
• (2010) Fish recruitment prediction, using robust supervised classification methods. Fernandes J.A., Irigoien X., Goikoetxea N., Lozano J.A., Inza I., Pérez A, Bode A. Ecol. Model. 221(2): 338-352. [Java code] . [Journal link] [ResearchGate] Q2.
• (2009) Optimizing the number of classes in automated zooplankton classification. Fernandes J.A., Irigoien X., Boyra G., Lozano J.A., Inza I. J. Plankton Res. 31(1): 19-29. [Java code] [Journal link] [ResearchGate]
  Q1.
• (2009) Spring zooplankton distribution in the Bay of Biscay from 1998 to 2006 in relation with anchovy recruitment.Irigoien X., Fernandes J.A., Grosjean P, Denis K., Albaina A, Santos M. J. Plankton Res. 31(1): 1-17. Featured article. [Journal link] [ResearchGate] Q1.
• (2009) Changes in plankton size structure and composition, during the generation of a phytoplankton bloom, in the central Cantabrian sea. Zarauz L, Irigoien X., Fernandes J.A. J. Plankton Res. 31(2): 193-207. [Journal link] [ResearchGate] Q1.
• (2008) Modelling the influence of abiotic and biotic factors on plankton distribution in the Bay of Biscay, during three consecutive years (2004-06). Zarauz L., Irigoien X., Fernandes J.A. J. Plankton Res. 30(8): 857-872. [Journal link] [ResearchGate] Q1.

Publications under review in refereed JCR-Journals

• Can we predict changes in fish abundance and distribution in response to decadal-scale climate scenarios? Fernandes J.A., Rutterford L., Simpson S.D., Butenschön M., Frölicher T.L., Yool A., Cheung W.W.L., Grant A. Global Change Biology
• Changes of potential catches for North East Atlantic small pelagic fisheries under climate change scenarios Fernandes J.A., Frölicher T.L., Rutterford L., Cheung W.W.L. Regional Environmental Change
• Effects of climate change and management policies on marine fisheries productivity in the north-east coast of India Das I., Lauria V., Kay S., Cazcarro K., Arto I., Genevier L., Fernandes J.A., Hazra S. Science of the Total Environment

Student supervision experience

• (2019-currently) Main supervisor of PhD student Igor Granado. University of Basque Country. Spain.
• (2019-currently) Associated supervisor to the PhD program on Computer Engineering, University of Basque Country.
• (2018) Main supervisor of student Imanol Echeverría Franco. University of Deusto. Spain.
• (2018) Co-supervisor of student Jone Bilbao Antolin. University of Basque Country. Master Student. Spain.
• (2017) Co-supervisor of student Isha Das. Jadavpur University. IPCC Scholarship Award. India.
• (2017) Main supervisor of student Alissa Ashley. Grupo Sie. Spain.
• (2016-2017) Main supervisor of the MResh student Lily Genevier. University of Plymouth. UK.
• (2016) Co-supervisor of the MSc student Maria Audilia Sanjaya. AZTI-Tecnalia. Spain.
• (2015) Co-supervisor of the postdoc Valentina Lauria. DECCMA project. UK.
• (2015) Co-supervisor of post doc Annukka Lehikoinen (Swedish University of Agricultural Scieneces / Finnish Environment Institute) in project Economics of Aquatic Foodwebs (ECA) funded by Academy of Finland AKVA programme. Finland.
• (2015) Co-supervisor of Johana Medelling (Universidad de Concepción - UDEC, Chile). Visiting PhD student. Chile-UK.
• (2014) Co-supervisor of student Nerea Aalto (University of Helsinki and Finnish Environment Institute). Finland.
• (2013) Main supervisor of Harry Par from University of Plymouth. NERC Research Experience Placement. UK.
• (2013) Main supervisor of Lionel Santos. Volunteering work in VECTORS project. UK.
• (2013) Co-supervisor of Thomas Barnfield from University of Exeter. Master student. UK.
• (2012) Co-supervisor of student Emilia Röhr (University of Helsinki and Finnish Environment Institute). Finland.
• (2010) Co-supervisor of Ari Urkullu. Análisis automático de señales de atún obtenidas mediante sonar de largo alcance a bordo de buques pesqueros. MSc in Computational Engineering and Expert Systems. University of Basque Country. Supervisors: Yosu Yurramendi, Haritz Arrizabalaga, Jose A. Fernandes. Spain.

Project leading experience

• (2019-2024) AZTI coordinator and task leader at European H2020 FutureMARES project.
• (2019-2023) Scientific leader and project co-leader of project European H2020 SUSTUNABLE project. Responsible of two deliverables.
• (2018) Oceanic tuna pilot defense in European Commission review in Luxemburg within DataBio project 11-12 September.
• (2017) Temporally PI T3 WP3 Topic 2 of MERP project: Generalising risk analysis in Probabilistic Graphical Models. UK.
• (2016-2017) Temporally PI T2.3 of CERES project: Projection modelling of changes in distribution and productivity of commercial fish populations. UK.
• (2012-2013) Responsible of two deliverables in EURO-BASIN project.

International conferences

• (2019) Machine learning is not only for big data and big data is not only a lot of data: successful examples in marine sciences with sparse and heterogenous data. Fernandes, J.A., Inza I., Hernandez-Gonzalez J., Granado I., Basurko O., Andonegi E., Boyra G., Ferrer L., Quincoces I., Irigoien I. ICES Annual Science Conference (ASC) 2019, Gothenburg, Sweden, 9-12 September.
• (2019) Factors controlling toxic microalgae in open marine waters: challenges for pioneering offshore bivalve aquaculture in the Basque Country (southeastern Bay of Biscay). Revilla M., Fernandes, J.A., Ferrer L., Fontán A., Laza-Martínez A., Rodríguez G., Sagarminaga Y., Solaun O. ICES Annual Science Conference (ASC) 2019, Gothenburg, Sweden, 9-12 September.
• (2019) Early warning systems for shellfish safety - The pivotal role of computational science. Lectures Notes in Computer Science (LNCS), Springer. Mateus, M., , Fernandes, J.A., Revilla, M., Pinto, L., Ferrer, L., Ruiz-Villareal, M., Miller, P.I., Maguire, J.A.. Lectures Notes in Computer Science (LNCS), Springer. International Conference on Computational Science (ICCS), Marine Computing in the Interconnected World for the Benefit of the Society, Faro, Portugal, 12?14 June 2019.
• (2018) Global fishery datasets: some practical utilities. Fernandes, J.A.. Invited speaker at BlueBRIDGE workshop: "Supporting Blue Growth with innovative applications based on EU e-infrastructures", 14-15 February 2018, Brussels.
• (2018) Use of Bayesian networks for beach litter prediction. Granado, I., Basurko, O. C., Hernández-González, J., Fernandes, J.A., Ferrer, L., Rubio, A. The XVIth International Symposium on Oceanography of the Bay of Biscay (ISOBAY 16). Anglet, France, 5-7 June.
• (2018) Fishing for food in a warm and acidic ocean requires adaptive management targets. Widdicombe, S., Queirós, A., Fernandes, J.A., Genevier, L., Lynam, C. WCMB 2018 Montréal. Climate change impacts on marine biodiversity. May 13.
• (2017) A scenario framework to explore the future migration and adaptation in deltas: A multi-scale and participatory approach. Kay, S., Fernandes, J.A.. The Indian Ocean: recent research and questions for the future. Liverpool, UK, 5-8 September.
• (2016) Modelling biogeochemistry and primary production in the Bay of Bengal. Kebede, A., et al., Fernandes, J.A.. . EGU 2017. European Geosciences Union General Assembly 2017, Vienna, Austria. 23-28 April.
• (2016) Comparing fisheries across climate change vulnerable deltas. Fernandes, J.A., Lauria V., Ofori-Danson P., Ahmed M., Hossain M., Barange M. DECCMA 4th Consortium Workshop. Southampton, UK, 12-15 January.
• (2016) An integrated framework to assess future livelihood and poverty changes in deltas: an application to coastal Bangladesh. Nicholls R.J., Lazar A.N., Payo A., Hutton C., Adams H., Salehin M., Haque A., Clarke D., Bricheno L., Fernandes, J.A., Rahman M., Ahmed A., Streatfield P.K. European Geosciences Union General Assembly 2016. Vienna, Austria, 17-22 April.
• (2016) A scale-dependent approach to understanding socio-ecological systems: examples from global, regional and local fisheries. Barange M., Fernandes, J.A., Mullon C., Merino G. Understanding marine socio-ecological systems (MSEAS). Brest, France, 30 May - 3 June.
• (2016) Predicting species distribution shifts due to climate change: An example of a British snail. Queirós, A.M., Fernandes, J.A. Widdicombe, S. Understanding marine socio-ecological systems (MSEAS). Brest, France, 30 May - 3 June.
• (2015) An integrated framework to assess plausible future livelihood and poverty changes in deltas: an application to coastal Bangladesh Lazar A.N., Payo A., Nicholls R.J., Hutton C., Adams H., Salehin M., Haque A., Clarke D., Bricheno L., Fernandes, J.A. Rahman M., Ahmed A., Streatfiled P.K. American Geophysical Union Conference. Sustainable Deltas session: Multi-disciplinary Analyses of Complex Systems. San Francisco, EEUU, 14-18 December.
• (2015) Marine ecosystem models for ecosystem-based management: is the time arrived? Artioli, Y., Cazenave, P. Ciavatta, S., Fernandes, J.A., Heard, J., Kay, S., Papathanasopoulou, E., Saux-Picart, S., Wakelin, S., Allen, J.I. Fernandes J.A., Marine and human systems: Addressing multiple scales and multiple stressors. Trieste, Italy, 26-30 October.
• (2015) The hydro-environment and livelihoods in coastal Bangladesh. Lazar A., Nicholls R.J., Hutton C., Adams H., Payo A., Salehin M., Haque A., Clarke D., Bricheno L., Fernandes J.A., Begum D., Szabo S., E-proceedings of the 36th IAHR World Congress. The Hague, the Netherlands, June 23 - July 3.
• (2015) Dealing with uncertainty when developing socio-economic scenarios for North Atlantic fisheries futures. Barange M., Mullon C., Fernandes J.A., Third International Symposium Effects of Climate Change on the Worls's Oceans. Santos City, Brazil, March 23-27.
• (2015) End-to-end assessment of ocean warming and acidification on fisheries: from experiments and models to economic and social impacts. Fernandes J.A., Papathanasopoulou E., Queirós A.M., Cheung W.W.W.L., Yool A., Artioli Y., Beaumont N., Widdicombe S., Austen M., Hattam C., Barange M. Third International Symposium Effects of Climate Change on the Worls's Oceans. Santos City, Brazil, March 23-27.
• (2015) Multivariate comparison of modelled and realised changes in fish abundance and distribution in response to climate. Fernandes J.A., Jennings S., Simpson S., Rutterford L., Cheung W.W.L., Hossain M.A.R., Grant A., Barange M. Third International Symposium Effects of Climate Change on the Worls's Oceans. Santos City, Brazil, March 23-27.
• (2015) Modelling fish production in Bangladesh under environmental change and socio-economic scenarios. Fernandes J.A., Kay S., Hossain M.A.R., Ahmed M., Lazar A.N., Barange M. Third International Symposium Effects of Climate Change on the Worls's Oceans. Santos City, Brazil, March 23-27.
• (2015) Scaling up experimental ocean acidification and warming research: from individuals to the ecosystem. Queirós A., Fernandes J.A., Faulwetter S., Nunes J., Rastrick S.P.S., Mieszkowska N., Artioli Y., Yool A., Calosi P., Arvanitidis C., Findlay H.S., Barange M., Cheung W.W.L., Widdicombe S. Third International Symposium Effects of Climate Change on the Worls's Oceans. Santos City, Brazil, March 23-27.
• (2015) Combining impacts and consequences as a pre-requisite to adaptation: impacts of climate change on global fisheries and consequences for national dependencies on fisheries. Manuel Barange, J Scholtens, E.H. Allison, G. Merino, J.L. Blanchard, J. Harle, I. Allen, J. Holt, S. Jennings, Fernandes J.A., M. Ahmed, S. Kay, M. Hossain Third International Symposium Effects of Climate Change on the Worls's Oceans. Santos City, Brazil, March 23-27.
• (2015) The hydro-environment and livelihoods in coastal Bangladesh. Lazar A., Nicholls R.J., Hutton C., Adams H., Payo A., Salehin M., Haque S.A, Clarke D., Bricheno, Fernandes J.A., Begum D., Szabo S. 36th IAHR World Congress: Deltas of the future and what happens upstream. The Hague, Netherlands, June 28 - July 3.
• (2015) Fish Profiles within the Western Estuarine System of the Ganges-Brahmaputra-Meghna Delta using Socio-Technical Approach. Ahmed M., Hossain M.R., Fernandes J.A., Haque S.A., Salehin M., Rahman M., Barange M., Hossain M.A.R., Ahmed M., Rahman M.M. 5th International Conference on Water and Flood Management (Special Focus on Delta Research). Dhaka, Bangladesh, March 6-8.
• (2015) Developing methods to assess and project scenarios of ocean acidification on to populations, communities and ecosystem services. Widdicombe S., Queirós A.M., Fernandes J.A., Papathanasopoulou E., Hattam C. 2015 Aquatic Sciences Meeting. Association for the Sciences of Limnology & Oceanography (ASLO). Granada, Spain, February 22-27.
• (2014) Projecting fish production in Bangladesh under climate change. Fernandes J.A., Barange M., Hossain M.A.R., Ahmed M., Rahman M.M., Kay S., Torres R., Merino G., Lazar A.N. Deltas in Times of Climate Change II. Rotterdam, The Netherlands, September 24-26.
• (2014) Integration of bio-physical and livelihood dynamics for analysis of poverty in coastal Bangladesh. Lazar A.N., Nicholls R.J., Hutton C., Adams H., Rahman M.M., Salehin M., Clarke D., Akanda A.R., Dearing J.A., Wolf J., Begum D., Szabo S., Fernandes J.A., Matthews Z. Deltas in Times of Climate Change II. Rotterdam, The Netherlands, September 24-26.
• (2014) Comparing modelled and realised changes in fish abundance and distribution in response to climate. Fernandes J.A., Jennings S., Simpson S., Rutterford L., Cheung W.W.L., Barange M., Grant A. Advances in Marine Ecosystem Modelling Research Symposium (AMEMR) IV. Plymouth, UK, June 30 - 3 July.
• (2014) Estimating the economic impact of changes in the North Atlantic carbon cycle. Fernandes J.A., Beaumont N., Butenschon M., de Mora L., Kay S., Merino G., Barange M., Mullon C., St. John M. Advances in Marine Ecosystem Modelling Research Symposium (AMEMR) IV. Plymouth, UK, June 30 - 3 July.
• (2014) Modelling the economic impact of invasive species and mitigation measures in fouling and ballast waters for the shipping industry. Fernandes J.A., Austen M., Santos L., Vance T., Fileman T., Merino G., Buisman E. Advances in Marine Ecosystem Modelling Research Symposium (AMEMR) IV. Plymouth, UK, June 30 - 3 July.
• (2014) Projecting regional and national economic impacts of climate change on fish and shellfish using experiments and large scale modelling. Papathanasopoulou E., Fernandes J.A., Queirós A.M. Advances in Marine Ecosystem Modelling Research Symposium (AMEMR) IV. Plymouth, UK, June 30 - 3 July.
• (2014) Integrated climate change research: forget Snakes & Ladders! Queirós A.M., Fernandes J.A. Advances in Marine Ecosystem Modelling Research Symposium (AMEMR) IV. Plymouth, UK, June 30 - 3 July.
• (2014) Coupling terrestrial and marine biophysical processes with livelihood dynamics for analysis of poverty alleviation in Bangladesh. Fernandes J.A., Lazar A.N., Adams H., Kay S., Torres R., Ahmed M., Hossain M.A.R., Rahman M.M., Salehin M., Huq H., Nicholls R.J., Hutton C., Clarke D., Dearing J.A., Haque A., Akanda A.R., Wolf J., Streatfield P.K., Barange M., Mondal S., Saleh A.F., Bricheno L. Advances in Marine Ecosystem Modelling Research Symposium (AMEMR) IV. Plymouth, UK, June 30 - 3 July.
• (2014) A modelling framework for oceanic basins under double exposure. Mullon C., Merino G., Fernandes J.A., Cheung W.W.L., Barange M. 7th International Congress on Environmental Modelling and Software. San Diego, California, June 15-19.
• (2013) Contribution and long-term future of marine fisheries as providers of food and income in Bangladesh: a modelling study. Barange M., Fernandes J.A., Kay S., Parr H., Ahmed M., Hossain M., Rahman M. ESPA Annual Science Conference. London (UK), November 20-21.
• (2013) Recent trends in natural abundance and farming of aquatic organisms in west coast of Bangladesh. Hossain M., Ahmed M., Fernandes J.A., Barange M., Kay S., Rahman M. ESPA Annual Science Conference. London (UK), November 20-21.
• (2013) Modelling ocean acidification impacts: from biological experiments to economic assessments and social impacts. Fernandes J.A., Queirós AM, Artioli Y, Widdicombe S, Beaumont N, Cheung WWL, Merino G, Seeley B, Turley C, Calosi P, Papathanasopoulou E, Hattam C, Austen M, Yool A, Anderson TR, Pope EC, Hall-Spencer J, Speirs D, Flynn KJ, Grant A, Barange M. ICES Annual Science Conference. 23-27 September. Reykjavik, Iceland. [Doc link]
• (2013) A Bayesian network for evaluation of setting and reaching the targets of the Water Framework Directive. Fernandes JA, Kauppila P, Uusitalo L, Fleming V, Kuikka S, Pitkänen H. ICES Annual Science Conference. 23-27 September. Reykjavik, Iceland. [Doc link]
• (2013) Forecasting recruitment of multiple fish species using multi-dimensional Bayesian network classifiers. Fernandes JA, Lozano J.A., Inza I., Irigoien X., Rodríguez J.D., Pérez A. ICES Annual Science Conference. 23-27 September. Reykjavik, Iceland. [Doc link]
• (2012) Development of a Bayesian Networks based method for assessing the status of hard bottom substrata biota. Rodríguez J.G., Fernandes J.A., Garmendia J.M., Muxica I., Borja A. XVII Simposio Ibérico de Estudios de Biología Marina. 11-14 September. Donostia-San Sebastián (Spain).
• (2012) Integrating trophic interactions into projecting distribution changes in marine fishes and invertebrates. Fernandes J.A., Cheung W.W.L., Jennings S., Grant A. 2nd Int. Symposium on Effects of Climate Change on the World's Oceans. 15-19 May. Yeosu (South Korea).
• (2012) Modelling large scale effects of global change on marine ecosystems and fisheries. Cheung W.W.L., Fernandes J.A., Frölicher T.L., Sarmiento J.L., Sumaila U.R., Pauly D.P. 2nd Int. Symposium on Effects of Climate Change on the World's Oceans. 15-19 May. Yeosu (South Korea).
• (2012) Testing cost-efficient monitoring methods for higher spatial resolution for macrozoobenthos and zooplankton. Uusitalo L., Nygård H., Lehtiniemi M., Tasala S., Fernandes J.A., Heiskanen A.S. Research and Ecosystem-Based Management Strategies in Support of the Marine Strategy Framework Directive. 14-16 May. Copenhagen (Denmark).
• (2012) Towards estimating the loss of fisheries in the North Atlantic. Merino G., Barange M., Mullon C., Cheung W., Fernandes J.A., Steinmetz F. 6th World Fisheries Congress 2012. 7-11 May. Edinburgh (Scotland).
• (2011) Spatial structure and nictemeral changes of the zooplankton community along the Garrucha canyon (SW-Spain) as derived from dissecting microscope, ZooImage and FlowCAM analysis. Muñoz M., Reul A., Bautista B., Blanco J. M., Rodríguez J., Fernandes J.A., León P. I., Irigoien X., Rodríguez V. 5th International Zooplankton Production Symposium Population Connections, Community Dynamics, and Climate Variability. 14-18th March, 2011. Pucon, Chile.
• (2010) A comparison between digital camera and scanner as imaging devices for semi-automated zooplanktton classification using microscope classification as control. Bachiller E., Fernandes J.A., Irigoien X. Aquatic Sciences: Global Changes from the Center to the Edge. International Joint Meeting with ASLO & NABS. 6-11 June. Santa Fe, NM, USA.
• (2010) Small-scale vertical distribution of zooplankton in the Catalan Sea: Relationships with physical characteristics. Alcaraz M., Saiz E., Lebourges-Dhaussy A., Graña R., Cotano U., Fernandes J.A. , Isari S., Zamora S., Mouriño B., Irigoien X. Aquatic Sciences: Global Changes from the Center to the Edge. Rapp. Comm. Int. Mer Medit. Vol. 39 - pp. 84. 39th CIESM Congress. 10-14 May, Venice, Italy
• (2009) Robust approaches to supervised machine learning techniques for seven fish species recruitment prediction in fisheries. Fernandes J.A., Irigoien X., Goikoetxea N., Uriarte A., Lozano J.A. & Inza I. ICES/PICES/UNCOVER Symposium 2009 on Rebuilding Depleted Fish Stocks - Biology, Ecology, Social Science and Management Strategies. Warnemünde/Rostock (Germany), 3-6 November 2009. [poster pdf]. Using latex template by Brian Amberg.
• (2009) FlowCAM/PhytoImage intercalibration exercise. Denis K., Tunin-Ley A., Fernandes J.A., Maurer S., Parent J.-Y., Belin C., Irigoien X., Grosjean Ph. Third SCOR WG130 meeting. 13-26th May, 2009. Baton Rouge (LA), USA.
• (2009) Assessment of the discrimination potential fo bathymetric LIDAR and multispectral imagery for intertidal and subtidal habitats. Grande M., Chust G., Fernandes J.A., Galparsoro I. 33rd International Symposium on Remote Sensing of Environment (ISRSE). 4-8 May. Stresa (Italy)
• (2008) Relevance of otolith features for anchovy age classification. Ascoreca A., Fernandes J.A., Cotano U., Uriarte A., Irigoien X. XI international Symposium on Oceanography of the Bay of Biscay. 2-4 April. Donostia - San Sebastian (Spain).

Member and chair of international scientific groups, workshops and panels

• (2018) Inivited speaker of Salient points of the 2017 Atlas by Region. Side event Global Atlas of AIS-based Fishing Activity. In international Symposium on Fisheries Sustainability. Rome, 18-21 November.
• (2019) Invited chair and speaker in workshop and public lectures. Remote sensing of marine ecosystems. Faculty of Science, Univeristy of Split. Split, Croatia (15-19 April).
• (2019) Member and speaker in ICES Working Group on Impacts of Shipping (WGSHIP). 25-27 November 2019. Copenhage, Denmark
• (2019) Member and speaker in WGMLEARN - Working group on machine learning in marine science. Vliz, Ostend, Belgium, May 22-24.
• (2018) Chair and speaker of FAO Atlas of AIS-based Fishing Footprint and Effort - Preliminary findings. Side event at Committee on Fisheries 33rd Session. Rome, 9-13 July 2018.
• (2018) Speaker at WKMLEARN: ICES Workshop on Machine Learning in Marine Science (WKMLEARN). 16-20 Abril. link
• (2018-Currently) Editorial Board Member of Malaysian Journal of Computing and Applied Mathematics (MyJCAM). Topics: Decision Support System, Image Processing & Pattern Recognition, Artificial Intelligence, Machine Learning, and Big Data Analytics.
• (2018) Member of ICES Workshop on Uses of Machine Learning in Marine Science (WKMLEARN). April 16-20, Copenhagen, Denmark.
• (2017) Member of the Scientific Committee. I International Conference on Informatics, Computing and Applied Mathematics South Asia. July 18-20, Kuala Terengganu, Malaysia.
• (2017) Annual meeting of the ICES Working Group on Small Pelagic Fish, their Ecosystems and Climate Impact (WGSPEC). April 3-5. Plymouth. UK.
• (2017) Invited speaker in ICES/PICES Symposium on Drivers of dynamics of small pelagic fish resources. October 7-9. Victoria. Canada.
• (2017) Invited speaker in ESPA fisheries working group in London. 24 February.
• (2016) Chair of ICES workshop on FISH DIstribution SHifts (WKFISHDISH). 22-25 November. Copenhagen. Denmark. Report
• (2016) Participant of ICES/PICES Workshop on Economic Modelling of the Effects of Climate Change on Fish and Fisheries (WKeconSICCME). 3-4 June. Brest. France. Report
• (2016) Conservation of natural resources in coastal ecosystems for the benefit of humankind and global balance. Universiti Sains Malaysia, Centre for Marine and Coastal Studies (CEMACS), in Muka Head National Park, Penang, Malaysia. 25-29 January.
• (2016) MSCC/MASTS Bioeconomic Modelling in Policy & Management. Didcot, UK. 3-4 February.
• (2015) Dynamic spatio-temporal hybrid life cycle analysis (LCA) at PML. 26 June.
• (2015) Global change in coastal marine ecosystems: science, policy and sustainable development. Santos, Brazil, 17-20 March.
• (2015) Addressing uncertainty in projecting climate change impacts in marine ecosystems. Santos, Brazil, 22 March.
• (2014) MSCC/MASTS Ecosystem Modelling. UK 4-15 May.
• (2009) Member of ICES benchmark workshop on short lived species (WKSHORT)

Other publications and technical reports

• (2019) Fernandes, J.A., Quincoces, I., Reite, J., Aarsæther, K.G., Uriondo, Z., Uranga, J., Nuñez, M., Zmicjer, D., Haugen, J., Michelsen, F. A. D3.3 - Fisheries Pilots final report: Report of pilots and feedback from users. DataBio H2020 project.
• (2019) Mateus, M., Fernandes, J., Revilla, M., Ferrer, L., Ruiz-Villareal, M., Miller, P., Schmidt, W., Maguire, J.A., Silva, A., Pinto, L. Early warning systems for shellfish safety: The pivotal role of computational science. In: Rodrigues, J.M.F., Cardoso, P.J.S., Monteiro, J., Lam, R., Krzhizhanovskaya, V.V., Lees, M.H., Dongarra, J.J., Sloot, P.M.A. (Eds.), Computational Science ? ICCS 2019, Lectures Notes in Computer Science (LNCS, volume 11539), Springer, Proceedings of the 19th International Conference on Computational Science (ICCS), Marine Computing in the Interconnected World for the Benefit of the Society (Workshop), Faro, Portugal, 12-14 June 2019, Part IV, pp. 361-375. https://doi.org/10.1007/978-3-030-22747-0_28
• (2018) Fernandes, J.A., Quincoces, I., Reite, J., Uriondo, Z., Aarsæther, K.G., Nuñez, M., Zmicjer, D., Auran, P.G., Haugen, J., Michelsen, F. A. D3.2 - Fishery Pilots Intermediate Report. DataBio H2020 project
• (2018) J Nicholls, R & Kebede, Abiy S. & Allan, Andrew & Arto, Iñaki & Cazcarro, Ignacio & Fernandes, Jose & Hill, C & Hutton, C & Kay, Susan & Lauria, Valentina & Lawn, J & N Lázár, A & Macadam, I & Palmer, M & Suckall, Natalie & L Tompkins, E & Vincent, Katharine & Whitehead, Paul. The DECCMA Integrated Scenario Framework: A Multi-Scale and Participatory Approach to Explore Migration and Adaptation in Deltas.
• (2018) Fernandes. J.A., Quincoces, I., Fradua, G, Ruiz, J., Lopez, J., Murua, H., Inza, I., Lozano, J.A., Irigoien, X., Santiago, J. Fishery pilot B1: Planning of oceanic tuna fisheries - Arrantza B1 kasua: Atun tropikalaren arrantza plangintza. DataBio general assembly 02 (Helsinki), 27-29 June, DOI: 10.13140/RG.2.2.22519.32165.
• (2018) Granholm, G., Charvat, L., Huurinainen, S., Auran, P.G., Pukacki, J., Södergård, C., Tergujeff, R., Hitado, J., Angel, M., Fournier, F., Fernandes, J.A. D6.3 - State of the Art. DataBio H2020 project.
• (2018) Fernandes, J.A., Revilla, M.I., Granado, I., López, J., Arantzamendi, L., Sagarminaga, Y., Ferrer, L., Solaun, O., González, M., Irigoien, X. PREFI: Desarrollo de un sistema de predicción de la probabilidad de blooms de algas.
• (2016) Modelling standards across the DECCMA project. Payo A., Hill C., Haque A., Mukhopadhyay A., Raju P. V., Addo A., Francheschini G., Kay S., Fernandes J. A., Macadam I., Whitehead P., 2016. DECCMA Working Paper, Deltas, Vulnerability and Climate Change: Migration and Adaptation, IDRC Project Number 107642.
• (2015) DEVOTES deliverable 4.3: Report on the analysis of reference levels for indicators of biodiversity for selected pilot areas.Lynam C, Niquil N, Andonegi E, Queiros A, Tecchio S, Fernandes JA, Patrício J., Piroddi C., Thorpe R.
• (2015) ESPA-DELTA Work Package 5: Final Report. Quantitative Bio-Physical Modelling. Wolf J, Barange M, Barbour E, Bricheno L, Caesar J, Clarke D, Darby S, Fernandes JA, Ghosh T, Haque A, Hazra S, Islam S, Kay S, Lazar A, Mondal S, Rahman M, Salehin M, Torres R, Whitehead P.
• (2014) EURO-BASIN Deliverable 8.1: Report outlining the range of costs caused by changes in the Carbon budget of the North Atlantic,: based on predictive modelling of future North Atlantic ecosystem states. Barange M, Fernandes J.A., Beaumont N., Kay S., Butenschon M., Yool A.
• (2014) VECTORS Deliverable 3.3.1: Impact of ecological changes on economic results of marine sectors. Buisman, F.C., R.A Groeneveld, H. Bartelings, J.A. Fernandes, K. Hamon, F. Maynou, P. Nunes, L. Piñol, L. Rodríguez, S. Sastre, F.E. Schasfoort, S. Simons, A. N. Walker, M. Austen, J. Bishop, R. van Duinen, T. Fileman, G. Merino, M. Loureiro, L. P. Pérez, J-J. Poos,A.M. Queirós, L. Santos, D. Smith, T. Vance, L. Voltaire, F. Viard, H.-P. Weikard
• (2014) ESPA-DELTA project report: Bio-Physical Model Descriptions and Interactions (Bangladesh - Bay of Bengal). Wolf J, Barange M, Barbour E, Bricheno L, Caesar J, Clarke D, Darby S, Fernandes JA, Ghosh T, Haque A, Hazra S, Islam S, Kay S, Lazar A, Mondal S, Rahman M, Salehin M, Torres R, Whitehead P.
• (2013) EURO-BASIN Deliverable 7.1: Hindcast estimation of potential and net economic benefits of N. Atlantic fisheries. Merino G, Barange M, Fernandes JA.
• (2013) EURO-BASIN Deliverable 7.2: Scenarios for economic vs ecological optimisation in the future use of N. Atlantic fisheries. Merino G, Barange M, Fernandes JA.
• (2013) EURO-BASIN Deliverable 7.3: Report on exploitation and management scenario workshop. Fernandes JA, Mullon C, Barange M, Gorka M.
• (2013) Report on ESPA-DELTA Fisheries Meeting: biology, modelling and scenarios. Fernandes JA, Barange M, Hossain M, Ahmed M, Lazar A.
• (2012) EURO-BASIN Deliverable 7.4: Projected future changes in maximum catch potential of key fish populations. Fernandes JA, Cheung WWL, Jennings S, Grant A, Steinmetz F., Yool A., Anderson TR.
• (2012) EURO-BASIN Deliverable 7.5: A simulation model that account for trophic interaction in predicting distribution of exploited fish. Fernandes JA, Cheung WWL, Jennings S, Grant A, Butenschon M, de Mora L, Frölicher TL, Barange M.
• (2012) Projecting distribution changes in marine fishes and invertebrates by integrating trophic interactions. Fernandes J.A., Cheung W.W.L., Jennings S., Grant A. 6th World Fisheries Congress 2012. 7-11 May. Edinburgh (Scotland).
• (2011) Zooplankton Image Analysis Manual: automated identification by means of scanner and digital camera as imaging devices. Bachiller E. & Fernandes J.A.. Revista Investigación Marina 18(2) :16-37. [Journal link] [ResearchGate]
• (2011) Bay of Biscay: Analysis of climate impacts on anchovy and sardine via bottom up processes. Chapter 5 presented by Xabier Irigoien in Deliverable 1.1, Report on analyses of climate-driven processes on farage fish distribution an abundance within each Case Study region (Month 15). In: FACTS project (Forage Dish Interactions), collaborative Research Project on "Sustainable use of seas and oceans: importance of forage fish in the ecosystem". Chapter based on unpublished work by Fernandes J.A., Irigoien X., Lozano J.A., Inza I., Pérez A., Goikoetxea N.
• (2011) Escenarios de reclutamiento para la anchoa en 2012 e implicaciones para la toma de decisiones de gestión. Ibaibarriaga L., Boyra E., Fernandes J.A., Uriarte A., Cotano U. Technical report for the Ministry of Agriculture, Fish and Food of Basque Country Government and for the Ministry of Environment of Spanish Government.
• (2011) Manuscript on indicators for hard bottom substrata. Germán J., Fernandes J.A., Garmendia J.M., Muxika I., Borja A. Deliverable 4.3-4 of Water bodie in Europe: Integrative Systems to assess Ecological status and Recovery (WISER) project. Collaborative Project (large-scale integrating project), Theme 6: Environment (including Climate Change).
• (2010) Use of juvenile abundance indices for the management of the Bay of Biscay. Ibaibarriaga L., Uriarte A., Sanchez S., Fernandes J.A., Irigoien X. Working document to WGANSA, 24-28 June 2010, Lisbon (Portugal).
• (2010) The potential use of a Gadget model to predict stock responses to climate change in combination with Bayesian Networks: the case of the Bay of Biscay anchovy. Andonegi E., Fernandes J.A., Quincoces I., Irigoien X., Pérez A., Howell D., Stefánsson G. International Symposium “Climate Change Effects on Fish and Fisheries: Forecasting Impacts, Assessing Ecosystem Responses, and Evaluating Management Strategies.” Sendai (Japan), April 26-29.
• (2010) UNCOVER: Fish stock recovery strategies - Report from the Bay of Biscay Andonegi E., Quincoces I., Murua H., Fernandes J.A., Uriarte A., Sanchez S., Cerviño S., Velasco F., Huret M., Lehuta S., Petitgas P.
• (2009) Anchovy Recruitment Mixed Long Series prediction using supervised classification. Fernandes J.A., Irigoien X., Uriarte A., Ibaibarriaga L., Lozano J.A., Inza I. Working document to the ICES benchmark workshop on short lived species (WKSHORT) Bergen (Norway), 31 August-4 September.

Books and chapters

• (2019) Taconet, M., Kroodsma, D., Fernandes, J.A. (2019). Global Atlas of AIS-based fishing activity - Challenges and opportunities. Rome, FAO. ISBN: 978-92-5-131964-2.
• (2018) Fernandes, J.A., 2018. Chapter 13: Southern Asian fisheries in the Arabian Sea, Bay of Bengal and East Indian Ocean. Barange, M., Bahri, T., Beveridge, M., Cochrane, K., Funge-Smith, S., Poulain, F. (Eds.). Impacts of Climate Change on fisheries and aquaculture: Synthesis of current knowledge, adaptation and mitigation options. FAO Fisheries Technical Paper 627. Rome, FAO.
• (2018) Barange, M., Fernandes, J.A., Kay, S., Hossain, M., Ahmed, M., Lauria, V. 2018. Marine Ecosystems and Fisheries: Trends and Prospects. Nicholls, R.J., Hutton, C.W., Adger, W.N., Hanson, S.E., Rahman, M.M., Salehin, M. (Eds.). Ecosystem Services for Well-Being in Deltas: Integrated Assessment for Policy Analysis. Palgrave Macmillan. ISBN 978-3-319-71093-8 [link]
• (2018) Lázár, A., Payo, A., Adams, H., AHmed, A., Allan, A., Razzaque, A., Johnson, F. A., Barbour, E.J., Biswas, S.K., Caesar, J., Chapman, A., Clarke, D., Fernandes, J.A., Haque, A., Hossain, M.A.R., Hunt. A., Hutton, C.W., Kay, S., Nichols, R., Saleh, A.F.M., Salehin, M., Szabo, S., Whitehead, P.G. 2018. Integrative Analysis Applying the Delta Dynamic Integrated Emulator Model in South-West Coastal Bangladesh. Nicholls, R.J., Hutton, C.W., Adger, W.N., Hanson, S.E., Rahman, M.M., Salehin, M. (Eds.). Ecosystem Services for Well-Being in Deltas: Integrated Assessment for Policy Analysis. Palgrave Macmillan. ISBN 978-3-319-71093-8. [link]
• (2013) Supervised classification in marine science and fisheries management: Methods and applications. Fernandes J.A. (ISBN 978-3-659-37983-3). LAP LAMBERT Academic Publishing.
• (2011) Biodiversidad, ecosistemas y recursos marinos. J.M. Gorostiaga, Xabier Irigoien, Ángel Borja, Jose A. Fernandes, Marina Chifflet, Manuel González, Marta Revilla, Juan Bald, Mireia Valle, Joxe M. Garmendia, Víctor. Valencia, Almudena Fontán, Guillem Chust. (ISBN 978-3-659-37983-3). Gobierno Vasco, Servicio Central de Publicaciones del Gobierno Vasco. pp 53-63.

Awards and Fellowships

• (2017) Guipuzkoa fellowship for attracting and retain talent. Diputación Foral de Guipuzkoa, Spain.
• (2016) One of the 3 best papers of te GLOBEC network for the paper "Scaling up experimental ocean acidification and warming research: from individuals to the ecosystem." in Global Change Biology
• (2016) Summer hotpaper in ScienceWatch of Thomson Reuters for the paper "Scaling up experimental ocean acidification and warming research: from individuals to the ecosystem." in Global Change Biology
• (2016) Best 'Early Career Researcher' poster at DECCMA 4th Consortium Workshop. Southampton, UK.
• (2013) Extraordinary Prize of Doctorate of University of Basque Country 2010-2011
• (2007) Iñaki Goenaga Fundation fellowship for PhD students

Reviewer for

• Nature
• Global Change Biology
• Fish and Fisheries
• Environmental Science & Technology
• Frontiers of marine science
• Journal of Plankton Research
• Ecological Modelling
• Methods in Ecology and Evolution
• Aquatic Microbial Ecology
• Fisheries Research
• Limnology and Oceanography: Methods
• Continental Shelf Research
• AMBIO
• Deep-Sea Research Part II: Topical Studies in Oceanography
• Biodiversity & Endangered Species
• Comparative Analysis of Marine Ecosystem Organization (CAMEO) Program of NSF and NOAA
• Latin American Journal of Aquatic Research
• Journal of Sea Research
• African Journal of Marketing Management
• Agencia Nacional de Promoción Científica y Tecnológica (ANPCYT)
• Oman Majesty Research Trust Fund 2017
• Marine Ecology Progress Series
• Biological Reviews
• Diversity and Distributions
• Ecological informatics
• Computer Methods and Programs in Biomedicine
• Scientific data (Nature group)
• Journal of Environmental Management
• Journal of Marine Science & Research Development
• Sustainability
• Environment, Development and Sustainability journal
• International Aquatic Research journal
• Spanish Agencia Estatal de Investigación (AEI)

Additional formation

• (2015) Principal investigator workshop. 30 September.
• (2015) Managing in the Present. Broadleaf Development Services at Plymouth Marine Laboratory. 13-14 May.
• (2015) Trade, environment and growth. Basque Center for Climate Change, University of Basque Country and University of Groningen. By Prof. Erik Dietzenbacher. 9-13 March.
• (2014) Postgraduate research (PGR) supervisor training. University of Exeter.
• (2012) SAW training: Delivering science to children through science, art and writing. SAW Trust.
• (2009) Fisheries acoustic training course. Simrad.
• (2009) Creation of predictive theory through meta-analysis and secondary-analysis. Downing J.A. & Prairie Y.
• (2008) Data exploration, regression, GLM & GAM course. Highland Statistics Ltd.
• (2008) Time series analysis. Third CEU Summerschool on Advanced Data Analysis and Modelling. Sorzano O.
• (2008) Supervised pattern recognition (Classification). Third CEU Summerschool on Advanced Data Analysis and Modelling. Larrañaga P.

Teaching

• (2016) Introduction to Probabilistic Graphical Models (PGMs) for environmental modelling and social sciences. Plymouth Marine Laboratory, Plymouth (UK).
• (2016) Guest lecturer lecture for the contemporary issues in marine science module of the applied marine science MSc course. Plymouth University, Plymouth (UK).
• (2012) ZooImage software and plankton classification. (IMRH), Casablanca (Morocco).
• (2012) ZooImage software and plankton classification. Finnish Environment Institute (SYKE), Helsinki (Finland).
• (2011) Guest lecturer in the subject "Machine learning", Computer Engineering Degree. University of Basque Country, San Sebastian (Spain).
• (2011) EURO-BASIN Training Workshop on Introduction to statistical modelling tools, for habitat models development: Model Validation, performance measures, models comparison and Weka (open source software for data mining). AZTI-Tecnalia, Pasaia (Spain). [pdf]
• (2007-2010) ZooImage software and plankton classification. AZTI-Tecnalia, Pasaia (Spain).
• (2008-2009) Flowcam for phytoplankton digitalization and classification. AZTI-Tecnalia, Pasaia (Spain). CMIMA (CSIC), Barcelona (Spain).

Talks & Tutorials

• (2019) Invited talk at Universidad Isabel I. Desafíos y soluciones para la pesca debido al cambio climático. Jornada sobre preservación del medio ambiente: Impacto en el desarrollo social y económico. 13 Diciembre. Burgos.
• (2019) Invited talk in the Asteklima. Session: Big Data herramienta en la lucha contra el Cambio Climático. Advances and challenges for forecasting changes in abundance and distribution of marine species under climate change: opportunities for Big data, information fusion and machine learning approaches. Bilbao, 4 Marzo, 2019: https://info.bc3research.org/event/asteklima-big-data-herramienta-en-la-lucha-contra-el-cambio-climatico/
• (2019) Caballero A., Fernandes J.A. La teledetección y sus aplicaciones en el sector pesquero vasco. HaZi, Caballerizas (Arkaute), 12 de abril de 2019.
• (2019) Ciencias de la Computación en Investigación Marina. Invited Speaker at KISA master at computer department of the University of Basque Country. 22 November.
• (2018) Desarrollo de un sistema de predicción de la probabilidad de blooms de algas (PREFI). AKUIBATZAR. 4 December.
• (2018) Ciencias de la Computación en Investigación Marina. Invited Speaker at KISA master at computer department of the University of Basque Country. 23 November.
• (2017) Big Data in Marine Science: A few modelling examples. Invited Speaker at Seminar "Smart data collection for the future monitoring of the sea" during EFARO General Assembly 2017. May 8th Workshop, Brussels, Belgium. 17 May. Report
• (2017) Testing high quality satellite products in combination with probabilistic models to reduce choke species problem. Global Fishing Watch May 8th Workshop, Madrid, Spain. 8 May.
• (2017) CERES and FISH-MIP, building contrasting fishing scenarios around Maximum Sustainable Yield (MSY). CERES meeting, Galway, Ireland. 28 March.
• (2016) Fisheries-aquaculture interaction and aquatic sector relevance to national economies. CERES meeting, Majorca, Spain. 5 April.
• (2016) Projection modelling of changes in distribution and productivity of commercial fish. CERES meeting, Majorca, Spain. 5 April.
• (2016) Bio-economic modelling. Jose A. Fernandes. At the workshop Conservation of natural resources in coastal ecosystems for the benefit of humankind and global balance. Universiti Sains Malaysia, Centre for Marine and Coastal Studies (CEMACS), in Muka Head National Park, Penang, Malaysia. 25-29 January.
• (2015) Scaling up impacts from physiology to ecosystems: a specific example. Queirós A.M., Fernandes, J.A., Faulwetter S., Nunes J., Rastrick S.P.S., Mieszkowska N., Artioli Y., Yool A., Calosi P., Arvanitidis C., Findlay H.S., Barange M., Cheung W.W.L., Widdicombe S. Ocean acidification: what’s it all about? The Royal Society, 6-9 Carlton House Terrace, London SW1Y 5AG, United Kingdom, 4-5 June.
• (2015) Ocean acidification effects on commercially-important species – and wider impacts. Flynn, K., Fernandes, J.A., Hattam C., Beaumont N., Papathanasopoulou E., Quieros A., Widdicombe S., Barange M., Turley, C., Williamson, P., Lewis, C., Heath, M., Wilson, R., Speirs, D., Pope E.C., Cripps, G.L., Ocean acidification: what’s it all about? The Royal Society, 6-9 Carlton House Terrace, London SW1Y 5AG, United Kingdom, 4-5 June.
• (2015) From natural sciences to socio-economics using models: a bio-economic perspective within an Ecosystem Service (ES) approach. Jose A. Fernandes. At the workshop Global change in coastal marine ecosystems: science, policy and sustainable development. Santos, Brazil, 17-20 March.
• (2014) End-to-end assessment of ocean warming and acidification on fisheries and other ecosystem services: from experiments and models to economic and social impacts and perceptions. BioAcid meeting at GEOMAR. Kiel. Germany. September.
• (2012) From samples automatic classification to incorporating thropic interactions into projecting distribution of fishes under climatic change. University of British Columbia. Vancouver. Canada. May.
• (2012) Data mining in fisheries reseach: from zooplankton automated classification to fish recruitment forecasting. Brunel University. London. UK. February.
• (2011) Data mining in fisheries reseach: from zooplankton automated classification to fish recruitment forecasting. University of East Anglia. Norwich. UK. September.
• (2011) Supervised classification in fisheries reseach: from zooplankton automated classification to recruitment forecasting. CEFAS. Lowestoft. UK. September.
• (2011) Supervised classification applications in natural resources modelling. Greenland Institute of Natural Resources. Nuuk. Greenland. February.
• (2011) Supervised classification applications in fisheries management. Helsinki Institute for Information Technology. Helsinki. Finland. February.
• (2010) New approaches for fish recruitment forecasting: supervised classification, naive Bayes for regression and multi-dimensional classification. Institute of Information Theory and Automation, Academy of Sciences of the Czech Republic. Prague. July.
• (2010) IBAM: Evaluation of feasibility of reaching water framework directives objectives (WFD and HELCOM) in the Gulf of Finland. Finnish Environment Institute (SYKE). Helsinki. June.
• (2010) New approaches for fish recruitment forecasting: supervised classification, naive Bayes for regression and multi-dimensional classification. University of Helsinki. Helsinki. April.
• (2010) New approaches for fish recruitment forecasting. AZTI-Tecnalia. March.
• (2010) Supervised pre-processing approaches in multiple class-variables classification for fish recruitment forecasting. Universidad Politécnica de Madrid. March. [pdf]
• (2009) JUVENA 2009: Campaña, proyecciones y consecuencias. Irigoien X., Andrés M., Fernandes J.A. AZTI-Tecnalia. November.
• (2009) Recruitment prediction, classification, secondary analysis and meta-analysis. AZTI-Tecnalia. June. [pdf]
• (2009) Robust approaches to machine learning techniques for recruitment prediction in fisheries. UNCOVER (Barcelona). March. [pdf]
• (2009) Robust fish recruitment prediction using supervised classification methods. ECOANCHOA, AZTI-Tecnalia. March. [pdf]
• (2008) Problemas de clasificación supervisada en ciencias marinas: de la clasificación de imágenes de plancton a la predicción de reclutamiento. Fernandes J.A., Irigoien X., Lozano J.A, Inza I.. Suficiencia investigadora. 8 November, 2008. UPV-EHU, Donostia - San Sebastian (Spain).
• (2008) Recruitment prediction, from BNs to DBNs and MDBNs. Basque Country University. October.
• (2008) Recruitment prediction using supervised classification methods. AZTI-Tecnalia. September. [pdf]
• (2008) Habitat modelling with Bayesian Networks. Basque Country University. April.
• (2007) Procesamiento y clasificación automática. AZTI-Tecnalia. November. [pdf]
• (2007) Data Mining, problemas de clasificación con Weka. Universidad de Deusto. E-ghost. July. [pdf]

Akcnoledgements to E-ghost group and Borja Sotomayor for training in latex use.

Thesis collaborations

• (2009-2011) Influence of the northeastern Atlantic oceano-meteorological variability on the northern hake (Merluccius merluccius), based on the last three-decadal period data (1978-2006). Goikoetxea N. PhD thesis. AZTI-Tecnalia.
• (2008-2011) Trophic Ecology of small pelagic species in the Bay of Biscay. Bachiller E. PhD thesis. AZTI-Tecnalia.
• (2008-2009) Assessment of the discrimination potential of bathymetric LIDAR and multispectral imagery for intertidal and subtidal habitats. Grande M. European Master of Science in Marine Environment and Resources. AZTI-Tecnalia.
• (2007-2008) Feeding behaviour and diet of anchovy juveniles (Engraulis encrasilous L.) in the Bay of Biscay. Bachiller E. European Master of Science in Marine Environment and Resources. AZTI-Tecnalia.
• (2007) Description and modelling of plankton biomasa distribution in the Bay of Biscay by means of image analisis-based methods. Zarauz L. PhD thesis. AZTI-Tecnalia.

Basque, Spanish, UK, Finish, European projects and Intercontinental

• FutureMARES: Climate Change and Future Marine Ecosystem Services and Biodeversity
• SUSTUNABLE: Sustainable Tuna Fisheries Through Advanced Earth Observation Tools.
• SUMMERS: Sustainable Management of Mesopelagic Resources
• Marine C3S: Copernicus Climate Change Services - Marine, coastal and fisheries project
• PRIMROSE: Predictiong the impact of Regional Scale events on the Aquaculture Sector
• CERES: Climate change and European aquatic RESources
• MERP: Marine Ecosystems Research Programme
• DECCMA: DEltas, vulnerability and Climate Change: Migration and Adaptation
• UKOA: UK Ocean Acidification Research Programme
• ESPADeltas: Assessing Health, Livelihoods, Ecosystem Services And Poverty Alleviation In Populous Deltas
• DEVOTES: DEVelopment Of innovative Tools for understanding marine biodiversity and assessing good Environmental Status
• MyFish: Maximising Yield of Fisheries while Balancing Ecosystem, Economic and Social Concerns
• VECTORS: of Change in Oceans and Seas Marine Life, Impact on Economic Sectors
• WISER: Water bodies in Europe: Integrative Systems to assess Ecological status and Recovery
• EURO-BASIN: Basin Scale Analysis, Synthesis and Integration
• MARMONI: Innovative approaches for marine biodiversity monitoring and assessment of conservation status of nature values in the Baltic Sea
• FACTS: Forage Fish Interactions
• K-EGOKITZEN: Cambio Climático Impactos y Adaptación
• UNCOVER: UNderstanding the Mechanisms of Stock ReCOVERy
• ECOANCHOA by Department of Agriculture, Fisheries and Food of the Basque Country Government.
• PERFIL (CTM2006-12344-C02-02) from the Spanish Ministry of Education and by the Department of Agriculture, Fisheries and Food of the Basque Country Government.
• Theme 6 of the EC Seventh Framework program, through the Marine Ecosystem Evolution in a Changing Environment (MEECE No 212085) Collaborative Project.
• Collaborator in the SeaLifeBase

Surveys designed and supervised

• (2013-2014) Fish market data collection (sizes, species, price and abundance) in Bangladesh.
• (2014) Shipping industry data in relation to the cost of non-indigenous specie mitigation measures (ballast water systems and anti bio-fouling).

Oceanographic surveys

• (2009) Perfil at Mediterranean Sea. Flowcam. June.
• (2008) Perfil at Cantabrian Sea. Flowcam. July.
• (2008) Bioman at Cantabrian Sea. Pairovet and Flowcam. May.
• (2007) Bioman at Cantabrian Sea. Cufes and Flowcam. May.

Visiting Scientist

• (2012) University of British Columbia, Fisheries Centre, Vancouver, Canada. William Cheung. Thee months.
• (2010) University of Helsinki, Finland. Sakari Kuikka and Laura Uusitalo. Financed by Spanish Ministry of Education. Fellowships for European PhDs. Thee months.
• (2009) Ifremer, France. Alina Tunin Ley and Daniele Maurer. Financed by AZTI-Tecnalia. One week.
• (2008) Mons-Hainaut University, Belgium. Philippe Grosjean and Kevin Denis. Financed by AZTI-Tecnalia. Two weeks.
• (2007) Mons-Hainaut University, Belgium. Philippe Grosjean and Kevin Denis. Financed by AZTI-Tecnalia. One week.

Organized events and outreach activities

• (2019) AZTI seminar: Recent applications of machine learning and Big data in marine sciences within AZTI projects. Fernandes, JA., Galparsoro, I., Granado, I., Juez, A., Lanzen, A., Roux, F. 14 June, 2019.
• (2016) Marine food web activities for children at the British science week at Plymouth City Museum & Art gallery. 16 March. MERP project. 50 children from Mayflower Academy (Plymouth). 16 March.
• (2012) Fish and climate at Scarning Primary School (Norwich). As part of SAW trust program: science, art and writing.
• (2011-2012) Every two weeks "Fish coffee club at UEA", a serie of informal meetings/talks to gather multidisciplinar proffesors, postdocs and PhD students that work on issues related to Fisheries.

ZooImage training and counseling

ZooImage (http://www.sciviews.org/zooimage/) is a tool for automated classification of plankton images. It can be used for scanned samples and for FlowCam images, or for any other divice images if they have a uniform background. This tool has been used in some of my research projects and I have been providing training to people of several countries:

• (2012) Morocco (Casablanca): National Institute of Fisheries Research (INRH).
• (2011) Finland (Helsinki): Finnish Environment Institute (SYKE).
• (2011) Chile: Karen Manríquez, Nicolás Bralic (COPAS Center-Universidad de Concepción).
• (2010) France: Delphine Bonnet and Juliette Balavoine (CNRS-Université Montpellier II).
• (2010) Taiwan: Elise Marquis (National Taiwan University).
• (2009) Spain: Sonia Romero Romero (Universidad de Cádiz).
• (2009) Spain: Cristina Garcia Muñoz (CSIC).
• (2008-2009) Spain: María Lidia Nieves (Universidad de las Palmas).
• (2008-2009) Spain: Pablo León (Universidad de Málaga).
• (2008-2009) Spain: Enric Saiz (CMIMA), CSIC.
• (2008) France: Serge A. Poulet (INRS).
• (2008) Greece: Nikolaos Nikolioudakis (University of Crete).
• (2008) South Africa: Fabienne Cazassus (MA-RE Institute, UCT).
• (2007) Portugal: María Manuel Angelico (IPIMAR).

Our manuals and course materials can be downloaded:

• Detailed manual
• Resumed manual
• Course material
• Scanner and digital camera RIM manual

Flowcam training and counseling:

• (2009) Spain: Course in CMIMA (CSIC). Barcelona. June.
• (2009) Spain: Courses in AZTI-Tecnalia. San Sebastian. May, June and July.
• (2008) Spain: Courses in AZTI-Tecnalia. San Sebastian. May and July.

Television, newspapers and social media: Divulgative Science

• Interview by Radio Popular (local) in relation to climate change impact on global fish biomass. Bilbao, 14 June, 2019
• Españoles en el mar de Radio Nacional de España FAO AIS report interview
• Agro5 de Radion Nacional de España FAO AIS report interview
• Promotional video of Fisheries C3S for Copernicus website (to be published early 2020).
• International university: La Universidad Isabel I analiza la influencia del cambio climático en el océano y sus consecuencias
• National newspaper La Razón La Universidad Isabel I analiza la influencia del cambio climático en el océano y sus consecuencias
• Local newspaper Noticias Castilla y León La Isabel I analiza el impacto del cambio climático en el océano
• Onda Vasca. FAO AIS report interview.
• Hossain, M.A.R., Fernandes, J.A., Ahmed, M., Kay, S., Payo, A. and Barange, M. 2016. Fisheries management can amplify or minimise the impacts of climate change on the productivity of the Bangladesh marine ecosystem by the mid of 21st century. ESPA Deltas Newsletter, 2: 10-11.
• "El mundo" newspaper describes the main research topics of the ISW group that includes my work on recruitment prediction: 26 January 2011.
• Itsasnet: El portal del mar Software para predecir el reclutamiento de peces (Recruitment Forecasting Software) November 2011. A new about a software I developed during my thesis freely available now.
• Diario Vasco newspaper. Azti-Tecnalia publica un manual sobre el estudio del zooplacton en imágenes March 2011. A new about a technical manual written by Eneko Bachiller and me for semi-automatic zooplankton classification.
• ETB1 channel. Kresala program. February 2010. Eneko Bachiller comments our work in semi-automatic zooplankton classification.
• ETB1, ETB2 and ETB3 channels. Teknopolis program. 'Tras la pista de la anchoa'. November 2009. Xabier Irigoien comments our work studing relationships between anchovy and climate.
• SATV (South Asian Television) in Bangladesh. National news. Aug 03, 2014 1:51 pm. Interview about climate and fishing effects on natural resources and advice on local development.
• DECCMA project blog. Projecting Fish Production Under Climate Change: A Comparative Analysis Across Three Vulnerable Deltas. 25/06/2015. V. Lauria, J.A. Fernandes, S. Kay & M. Barange (PML).
• The Guardian (UK). How warming seas are forcing fish to seek new waters. 08/01/2017. Robin McKie.
• The International Business Times (UK). Six biodiversity hotspots claimed to be on brink of ecosystem collapse. 23/02/2017. Our work gets quoted through my colleague.
• The UK Parliament discuss our Fish and Fisheries paper about Ocean Acidification impacts. Ocean acidification inquiry.
• Report on the co-chaired ICES workshop on FISH DIstribution SHifts in various news (e.g. ICES finds ‘substantial changes’ in fish distribution).

Weka

• Supervised version of Cmean missing values imputation filter based on the non-supervised version provided in weka. Download.

Favourite cites

• "Luck is what happens when preparation meets opportunity." Seneca Roman dramatist, philosopher and politician (5 BC - 65 AD).
• ""If your plan is for one year plant rice. If your plan is for ten years plant trees. If your plan is for one hundred years educate children." Confucius, Chinese teacher, editor, politician, and philosopher (479 BC).

Other interests

• Dancing: Salsa (combining Cuban style with other styles) and Argentine Tango. Teacher of salsa at "Keseakava" salsa bar (Bilbao, Spain), in the dance schools "Pasos de Baile" (Bilbao, Spain), "Estudio Rosa Mari" (Bilbao, Spain) and Chilli con Salsa (Norwich, UK).
• Theater: Colaborations with La hAceria (El bosque encantado). Amateur groups: Cuerpo Escena (Temple and Cuadros Insolitos) and Uyu-Yui (Crimenes Ejemplares).
• Martial arts: Penkat Silat (Indonesian and Malasian). Scottish and Auchi Jiu-Jitsu. Wing-chung. Budocan Karate. Viet vo dao. Aikido. Capoeira Gerais.
• Volunteering: FoodCycle and the GreenHouse (Norwich)

Scholar citations
ResearchGate
Academia.edu
Mendeley
Researcher ID: B-8985-2009
Linkedin
AnalyticBridge
ORCID

Twitter: @JAFernandesSP